Table 7

Protein ID Standard name Swiss-Prot annotation SGD annotation Enzymatic activity (our results) Structure Comments
1. Yer037w PHM8 Phosphate metabolism protein 8 unknown function Phosphatase (XMP, CMP, UMP, GMP)   PHO85 regulated (Sopko etl al., 2006)
2. Ygl224c SSM1 Protein of the SSM1 family pyrimidine nucleotidase SDT1 Phosphatase (XMP, UMP, CMP) Yes (our)  
3. Ykl033w-a YKD3A Uncharacterized hydrolase unknown function Phosphatase (XMP, FMN, dUMP)    
4. Yel038w UTR4 Enolase-phosphatase E1 unknown function Phosphatase (phosphoglycolate: low activity) Joint Center Synthetic lethality with PAC10 (Ygr078c) (Tong et al., 2004)
5. Ydl236w PHO13 4-Nitrophenylphosphatase alkaline phosphatase Phosphatase (phosphoglycolate)   Main phosphoglycolate phosphatase (DNA repair?)
6. Ykr070w YK50 Uncharacterized protein unknown function Phosphatase (glucose-6P, deoxyglucose-6P, deoxyribose-5P, glycero-1P)   Localization: mitochondrion
7. Ynl010w YNB0 Uncharacterized protein unknown function Phosphatase (glycero-1P)   Deletion: increased glycogen accumulation (Wilson et al., 2002)
8. Yer062c GPP2 Glycerol-3 phosphatase 2 glycerol-3 phosphatase 2 Phosphatase (glycero-3P, glycero-1P)   Induced by hyperosmotic and oxidative stress, diauxic transition
9. Yil053w GPP1 Glycerol-3 phosphatase 1 glycerol-3 phosphatase 1 Phosphatase (glycero-3P, glycero-1P) Yes (our) Constitutive isoform, induced by anaerobic and osmotic stress
10. Ymr130w YM14 Uncharacterized protein unknown function Phosphatase (3P-glyceraldehyde)    
11. Yor131c YOR31 Uncharacterized hydrolase unknown function Phosphatase (pyridoxal phosphate)    
12. Ygr208w SERB Phosphoserine phosphatase phosphoserine phosphatase Phosphatase (P-serine) Crystals phosphoglycerate pathway
13. Yhr044c DOG1 Deoxyglucose-6P phosphatase 1 deoxyglucose-6P phosphatase Phosphatase (deoxyglucose-6P, ribose-5P, mannose-6P, glucose-6P)   resistance to 2-deoxyglucose
14. Yhr043c DOG2 Deoxyglucose-6P phosphatase 2 deoxyglucose-6P phosphatase Phosphatase (deoxyglucose-6P, fructose-1P, mannose-6P, glucose-6P)   Induced by oxidative and osmotic stress, resistance to 2-deoxyglucose
15. Yor111w YOR111 Uncharacterized protein unknown function Nucleotide pyrophosphatase (TTP, UTP, CTP) (Maf-like!)   Two-hybrid: interacts with Ent3p (Uetz et al., 2000) in Tim Hughes review (2007)
16. Ybr252w DUT1 dUTP pyrophosphatase dUTPase Nucleotide pyrophosphatase (dUTP, dITP) solved Inviable; interacts with Tem1p, Cks1p, apn1, apn2, rad1, ung1, rad14, rev3, and Davierwala et al., 2005: rfc5, srb6
17. Yor004w UTP23 rRNA-processing protein UTP23 Processome component (40S) Ribonuclease (ssRNA)   Inviable; interacts with: Irp1 and nop1 (Davierwala et al., 2005); Mpp10p (Bleichert et al., 2006)
18. Yol042w NGL1 RNA exonuclease NGL1 putative endonuclease Ribonuclease (ssRNA endonuclease)   Localization: mitochondrion
19. Yml118w NGL3 Probable RNA exonuclease NGL3 putative endonuclease Ribonuclease (ssRNA endonuclease)   Interacts with: Ptk2p, Tpk1p, and Tpk2p (Ptacek et al. 2005)
20. Yjr019c TES1 acyl-CoA thioesterase acyl-CoA thioesterase Acyl-CoA thioesterase (lauroyl-CoA, hexanoyl-CoA, methylmalonyl-CoA)   Peroxisome; interacts with Atg1p, Snf1p, and Yck1p (Ptacek et al., 2005)
21. Ygr203w   (Rhodanese-like)   Protein phosphatase solved  
22. Yor285w   (Rhodanese-like)   Thiesterase solved  
23. Yil113w YIL3 probable P-Tyr phosphatase   phosphatase (pNPP)    
24. Ydl230w PTP1 protein Tyr-phosphatase PTP1   phosphatase (pNPP, P-Tyr peptides)    
25. Yir026c PVH1 protein Tyr-phosphatase PVH1   phosphatase (pNPP)    
26. Ygr123c PPT1 protein Ser/Thr phosphatase PPT1   phosphatase (pNPP)    
27. Yfr028c CDC14 protein Tyr-phosphatase CDC14   phosphatase (pNPP, P-Ser peptides)    
28. Ybl019w APN2 apurinic endonuclease APN2   phosphodiesterase (bis-pNPP)    
29. Ycr036w RBSK probable ribokinase   ribokinase (ribose, deoxyribose, ribulose)    
30. Ylr022c SDO1 ribosome maturation protein SDO1   Ribonuclease (ssRNA)    
31. Ykr043c YK23 Uncharacterized protein   phosphatase (acid phosphatase, Fructose 1,6-diP) solved  
32. Yor283w YO283 probable phosphoglycerate mutase unknown function phosphatase (many substrates